Stem-loop ssa-mir-338a-4

Accession

MI0026689

Description

Salmo salar ssa-mir-338a-4 precursor miRNA

Sequence

AACAACAUCCUGGUGCUGCCUGAGUgacucucaccaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((..((.((((...))))))....))))))))).))).))))).

Structure

-     C   -         --CC  A    c 
 AACAA AUC CUGGUGCUG    UG GUga  
 ||||| ||| |||||||||    || |||| u
 UUGUU UAG GACUACGAC    ac cacu  
G     U   U         CUca  -    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-338a-3p

• Accession: MIMAT0032615
• Description: Salmo salar ssa-miR-338a-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-338a-4-5p

• Accession: MIMAT0032617
• Description: Salmo salar ssa-miR-338a-4-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482