Stem-loop ssa-mir-430b

Accession

MI0026700

Description

Salmo salar ssa-mir-430b precursor miRNA

Literature search

1 open access papers mention ssa-mir-430b
(1 sentences)

Sequence

162 reads, 2.0 reads per million, 26 experiments

AAUUCAACUUGAGCAACUUUCCuuuaucacgcuaaagAAAGUGCUAUUAAGUUGGAGUAu
..(((((((((((((.(((((.((((......)))))))))))))..)))))))))....

Structure

--AA         --    A     C    uc 
    UUCAACUUG  AGCA CUUUC uuua  a
    |||||||||  |||| ||||| ||||   
    AGGUUGAAU  UCGU GAAAg aaau  c
uAUG         UA    -     -    cg 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-430b-5p

• Accession: MIMAT0032633
• Description: Salmo salar ssa-miR-430b-5p mature miRNA
• Sequence: 1 - AAUUCAACUUGAGCAACUUUCC - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-430b-3p

• Accession: MIMAT0032634
• Description: Salmo salar ssa-miR-430b-3p mature miRNA
• Sequence: 38 - AAAGUGCUAUUAAGUUGGAGUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482