Stem-loop ssa-mir-454

Accession

MI0026704

Description

Salmo salar ssa-mir-454 precursor miRNA

Literature search

1 open access papers mention ssa-mir-454
(1 sentences)

Sequence

ACCCUAUCAAUAUUGCCUCUGCuuuucugacugauaacggagUAGUGCAAUAUUGCUUAUAGGGUCU
((((((((((((((((..(((((((((.....))....))))))).)))))))))...)))))))..

Structure

--       ---         CU       ----  u 
  ACCCUAU   CAAUAUUGC  CUGCuuu    uc g
  |||||||   |||||||||  |||||||    || a
  UGGGAUA   GUUAUAACG  GAUgagg    ag c
UC       UUC         -U       caau  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-454-5p

• Accession: MIMAT0032641
• Description: Salmo salar ssa-miR-454-5p mature miRNA
• Sequence: 1 - ACCCUAUCAAUAUUGCCUCUGC - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-454-3p

• Accession: MIMAT0032642
• Description: Salmo salar ssa-miR-454-3p mature miRNA
• Sequence: 43 - UAGUGCAAUAUUGCUUAUAGGGUCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482