Stem-loop ssa-mir-456-1

Accession

MI0026706

Description

Salmo salar ssa-mir-456-1 precursor miRNA

Sequence

73150 reads, 273.0 reads per million, 87 experiments

GCAGGCAUCUUCCCAGCCUACAuguggauccaggaaucugCAGGCUGGUUAGAUGGUUGUCa
((((.(((((..(((((((....((((((......)))))))))))))..))))).))))..

Structure

--    G     UC       ACAu      cc 
  GCAG CAUCU  CCAGCCU    guggau  a
  |||| |||||  |||||||    ||||||   
  UGUU GUAGA  GGUCGGA    Cgucua  g
aC    G     UU       ----      ag 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-456-5p

• Accession: MIMAT0032645
• Description: Salmo salar ssa-miR-456-5p mature miRNA
• Sequence: 1 - GCAGGCAUCUUCCCAGCCUACA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-456-3p

• Accession: MIMAT0032646
• Description: Salmo salar ssa-miR-456-3p mature miRNA
• Sequence: 41 - CAGGCUGGUUAGAUGGUUGUC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482