Stem-loop ssa-let-7a-1

Accession

MI0026740

Description

Salmo salar ssa-let-7a-1 precursor miRNA

Literature search

2 open access papers mention ssa-let-7a-1
(6 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUcagagugacaucacaggagauaaCUGUACAGCCUCCUAGCUUUCC
.(((.(((.((((((((((((((...(((....)))....))..)))))))))))).))).)))...

Structure

--U   G   U            --  -aga   a 
   GAG UAG AGGUUGUAUAGU  Uc    gug c
   ||| ||| ||||||||||||  ||    |||  
   UUC AUC UCCGACAUGUCa  ag    cac a
CCU   G   C            au  agga   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7a-5p

• Accession: MIMAT0032688
• Description: Salmo salar ssa-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7a-3p

• Accession: MIMAT0032689
• Description: Salmo salar ssa-let-7a-3p mature miRNA
• Sequence: 46 - CUGUACAGCCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482