Stem-loop ssa-let-7a-5

Accession

MI0026744

Description

Salmo salar ssa-let-7a-5 precursor miRNA

Literature search

2 open access papers mention ssa-let-7a-5
(6 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUugugaagggauagaauccuauucaggugauaaCUAUACAGUCUAUUGCCUUCCU
.((((((((((((((((((((((.(((((((((...))))).)))).)....)))))))))))))))))))))...

Structure

--U                     ---- g    -     a 
   GAGGUAGUAGGUUGUAUAGUU    u ugaa gggau  
   |||||||||||||||||||||    | |||| ||||| g
   UUCCGUUAUCUGACAUAUCaa    g acuu uccua  
UCC                     uagu g    a     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7a-5p

• Accession: MIMAT0032688
• Description: Salmo salar ssa-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7a-5-3p

• Accession: MIMAT0032692
• Description: Salmo salar ssa-let-7a-5-3p mature miRNA
• Sequence: 55 - CUAUACAGUCUAUUGCCUUCCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482