Stem-loop ssa-let-7b-1

Accession

MI0026752

Description

Salmo salar ssa-let-7b-1 precursor miRNA

Literature search

3 open access papers mention ssa-let-7b-1
(9 sentences)

Sequence

1982416 reads, 6936.0 reads per million, 87 experiments

UGAGGUAGUAGGUUGUGUGGUUucaggguuguuauuuugccccaucaggaguuaaCUGUACAACCUACUGCCUUCCc
.(((((((((((((((((((((...((((.........))))...........)))))))))))))))))))))...

Structure

--U                     --------uca    ugu 
   GAGGUAGUAGGUUGUGUGGUU           gggu   u
   |||||||||||||||||||||           ||||   a
   UUCCGUCAUCCAACAUGUCaa           cccg   u
cCC                     uugaggacuac    uuu 

Annotation confidence High

Genome context

Unknown

Mature ssa-let-7b-5p

• Accession: MIMAT0032701
• Description: Salmo salar ssa-let-7b-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUGUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7b-3p

• Accession: MIMAT0032702
• Description: Salmo salar ssa-let-7b-3p mature miRNA
• Sequence: 56 - CUGUACAACCUACUGCCUUCC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482