Stem-loop ssa-let-7d-1

Accession

MI0026754

Description

Salmo salar ssa-let-7d-1 precursor miRNA

Literature search

2 open access papers mention ssa-let-7d-1
(5 sentences)

Sequence

UGAGGUAGUUGGUUGUAUGGUUucacauaauaaacagcccggagauaaCUGUACAACCUUCUAGCUUUCC
.(((.(((..((((((((((((((...................)).))))))))))))..))).)))...

Structure

--U   G   UU            -  acauaaua 
   GAG UAG  GGUUGUAUGGUU uc        a
   ||| |||  |||||||||||| ||        a
   UUC AUC  CCAACAUGUCaa ag        c
CCU   G   UU            u  aggcccga 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7d-5p

• Accession: MIMAT0032703
• Description: Salmo salar ssa-let-7d-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7d-3p

• Accession: MIMAT0032704
• Description: Salmo salar ssa-let-7d-3p mature miRNA
• Sequence: 49 - CUGUACAACCUUCUAGCUUUCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482