Stem-loop ppc-mir-228

Accession

MI0026850

Description

Pristionchus pacificus ppc-mir-228 precursor miRNA

Sequence

AAUGGCACUGCAUGAAUUCACGGCguucaaccacuugagcguaccauagcCGUGCUUUCUCGGUGACAUUCC
((((.(((((...(((..((((((((((((....))))))........))))))..))).))))).))))..

Structure

--    G     CAU   UU      --------      c 
  AAUG CACUG   GAA  CACGGC        guucaa c
  |||| |||||   |||  ||||||        ||||||  
  UUAC GUGGC   CUU  GUGCcg        cgaguu a
CC    A     --U   UC      auaccaug      c 

Annotation confidence Low

Genome context

ABKE03000076.1: 266726-266797 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-228

Mature ppc-miR-228-5p

• Accession: MIMAT0032846
• Description: Pristionchus pacificus ppc-miR-228-5p mature miRNA
• Sequence: 1 - AAUGGCACUGCAUGAAUUCACGGC - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-228-3p

• Accession: MIMAT0032847
• Description: Pristionchus pacificus ppc-miR-228-3p mature miRNA
• Sequence: 51 - CGUGCUUUCUCGGUGACAUUCC - 72
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260