miRBase entry: ppc-mir-2235b

Stem-loop ppc-mir-2235b

Accession

MI0026852

Description

Pristionchus pacificus ppc-mir-2235b precursor miRNA

Sequence

CCAUCCAAUUCUGUCCGGUCUGAACcauaguggauuguguUCACCGGGAGCAUUGUUUGAUC
.((..((((.((.((((((..((((((........)).)))))))))))).))))..))...

Structure

--C  UC    U  G      CU    -  uag 
   CA  CAAU CU UCCGGU  GAAC ca   u
   ||  |||| || ||||||  |||| ||    
   GU  GUUA GA GGGCCA  CUug gu   g
CUA  UU    C  -      --    u  uag

Annotation confidence Not enough data

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Genome context

ABKE03000123.1: 3623734-3623795 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-2235b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-2235b-5p

Accession	MIMAT0032850
Description	Pristionchus pacificus ppc-miR-2235b-5p mature miRNA
Sequence	1 - CCAUCCAAUUCUGUCCGGUCUGAAC - 25
Evidence	experimental Illumina [1], SOLiD [1]

Mature ppc-miR-2235b-3p

Accession	MIMAT0032851
Description	Pristionchus pacificus ppc-miR-2235b-3p mature miRNA
Sequence	41 - UCACCGGGAGCAUUGUUUGAUC - 62
Evidence	experimental Illumina [1], SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260