Stem-loop ppc-mir-8213

Accession

MI0026853

Description

Pristionchus pacificus ppc-mir-8213 precursor miRNA

Sequence

UAUGACACCUGAUGCAGAAUGAUAUucucucaguguggaauAUCCUUUGCUCGGUGGAAUAUC
(((..((((.((.(((((..((((((((........)))))))).)))))))))))..)))..

Structure

--   GA    U  U     AU        cuc 
  UAU  CACC GA GCAGA  GAUAUucu   a
  |||  |||| || |||||  ||||||||    
  AUA  GUGG CU CGUUU  CUAuaagg   g
CU   AG    -  -     -C        ugu 

Annotation confidence Low

Genome context

ABKE03000092.1: 346957-347019 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8213

Mature ppc-miR-8213-5p

• Accession: MIMAT0032852
• Description: Pristionchus pacificus ppc-miR-8213-5p mature miRNA
• Sequence: 1 - UAUGACACCUGAUGCAGAAUGAUAU - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8213-3p

• Accession: MIMAT0032853
• Description: Pristionchus pacificus ppc-miR-8213-3p mature miRNA
• Sequence: 42 - AUCCUUUGCUCGGUGGAAUAUC - 63
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260