Stem-loop ppc-mir-2238f

Accession

MI0026855

Description

Pristionchus pacificus ppc-mir-2238f precursor miRNA

Sequence

CCGUUCACUCUUCAGCUCAAUUGuugaucagaaacgAGUGACUGAGGCAGUGGAUGAGA
.((((((((((((((.(((.(((((.......))))).))))))))).))))))))...

Structure

--C        -      C   A     ga 
   CGUUCACU CUUCAG UCA UUGuu  u
   |||||||| |||||| ||| |||||  c
   GUAGGUGA GGAGUC AGU Agcaa  a
AGA        C      -   G     ag 

Annotation confidence Not enough data

Genome context

ABKE03000041.1: 1178198-1178256 [-]

Mature ppc-miR-2238f-5p

• Accession: MIMAT0032856
• Description: Pristionchus pacificus ppc-miR-2238f-5p mature miRNA
• Sequence: 1 - CCGUUCACUCUUCAGCUCAAUUG - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2238f-3p

• Accession: MIMAT0032857
• Description: Pristionchus pacificus ppc-miR-2238f-3p mature miRNA
• Sequence: 37 - AGUGACUGAGGCAGUGGAUGAGA - 59
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260