Stem-loop ppc-mir-8216

Accession

MI0026858

Description

Pristionchus pacificus ppc-mir-8216 precursor miRNA

Sequence

CCAGUUACCCGGUCUGGCCCUCCucgaucgaguuuggAGGCAAGACGUGCGUGGCUGCAU
.((((((((..((((.(((.(((............)))))).))))..).)))))))...

Structure

--C       - CG    G   C   ucgau 
   CAGUUAC C  GUCU GCC UCC     c
   ||||||| |  |||| ||| |||      
   GUCGGUG G  CAGA CGG Agg     g
UAC       C UG    A   -   uuuga 

Annotation confidence Low

Genome context

ABKE03000041.1: 1156443-1156502 [-]

Mature ppc-miR-8216-5p

• Accession: MIMAT0032862
• Description: Pristionchus pacificus ppc-miR-8216-5p mature miRNA
• Sequence: 1 - CCAGUUACCCGGUCUGGCCCUCC - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8216-3p

• Accession: MIMAT0032863
• Description: Pristionchus pacificus ppc-miR-8216-3p mature miRNA
• Sequence: 38 - AGGCAAGACGUGCGUGGCUGCAU - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260