Stem-loop ppc-mir-8217

Accession

MI0026859

Description

Pristionchus pacificus ppc-mir-8217 precursor miRNA

Sequence

ACGUCAGUUCUGCCACUUUUUACCaaggacugaguuggUAAGUGUGGUGCUCUGAUGUCG
(((((((..(.(((((..((((((((........)))))))).))))))..)))))))..

Structure

--       UU U     UU        gga 
  ACGUCAG  C GCCAC  UUUACCaa   c
  |||||||  | |||||  ||||||||    
  UGUAGUC  G UGGUG  GAAUgguu   u
GC       UC -     -U        gag 

Annotation confidence Low

Genome context

ABKE03000123.1: 893729-893788 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8217

Mature ppc-miR-8217-5p

• Accession: MIMAT0032864
• Description: Pristionchus pacificus ppc-miR-8217-5p mature miRNA
• Sequence: 1 - ACGUCAGUUCUGCCACUUUUUACC - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8217-3p

• Accession: MIMAT0032865
• Description: Pristionchus pacificus ppc-miR-8217-3p mature miRNA
• Sequence: 39 - UAAGUGUGGUGCUCUGAUGUCG - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260