miRBase entry: ppc-mir-8217

Stem-loop ppc-mir-8217

Accession

MI0026859

Description

Pristionchus pacificus ppc-mir-8217 precursor miRNA

Sequence

ACGUCAGUUCUGCCACUUUUUACCaaggacugaguuggUAAGUGUGGUGCUCUGAUGUCG
(((((((..(.(((((..((((((((........)))))))).))))))..)))))))..

Structure

--       UU U     UU        gga 
  ACGUCAG  C GCCAC  UUUACCaa   c
  |||||||  | |||||  ||||||||    
  UGUAGUC  G UGGUG  GAAUgguu   u
GC       UC -     -U        gag

Annotation confidence Not enough data

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Genome context

ABKE03000123.1: 893729-893788 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8217

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8217-5p

Accession	MIMAT0032864
Description	Pristionchus pacificus ppc-miR-8217-5p mature miRNA
Sequence	1 - ACGUCAGUUCUGCCACUUUUUACC - 24
Evidence	experimental Illumina [1], SOLiD [1]

Mature ppc-miR-8217-3p

Accession	MIMAT0032865
Description	Pristionchus pacificus ppc-miR-8217-3p mature miRNA
Sequence	39 - UAAGUGUGGUGCUCUGAUGUCG - 60
Evidence	experimental Illumina [1], SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260