Stem-loop ppc-mir-8220

Accession

MI0026864

Description

Pristionchus pacificus ppc-mir-8220 precursor miRNA

Sequence

AGGCGCUUGCCAGCUUUAUCCgcauugcaaucaaugaggcaggCUAAAGCUCGGCUAACGCCUCU
(((((...((((((((((.((((((((....))))...)).)).))))))).)))...)))))..

Structure

--     CUU   -       U  -  ---    c 
  AGGCG   GCC AGCUUUA CC gc   auug a
  |||||   ||| ||||||| || ||   ||||  
  UCCGC   CGG UCGAAAU gg cg   uaac a
UC     AAU   C       C  a  gag    u 

Annotation confidence Not enough data

Genome context

ABKE03000131.1: 535946-536010 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8220

Mature ppc-miR-8220-5p

• Accession: MIMAT0032874
• Description: Pristionchus pacificus ppc-miR-8220-5p mature miRNA
• Sequence: 1 - AGGCGCUUGCCAGCUUUAUCC - 21
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8220-3p

• Accession: MIMAT0032875
• Description: Pristionchus pacificus ppc-miR-8220-3p mature miRNA
• Sequence: 44 - CUAAAGCUCGGCUAACGCCUCU - 65
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260