Stem-loop ppc-mir-8221

Accession

MI0026865

Description

Pristionchus pacificus ppc-mir-8221 precursor miRNA

Sequence

GCGGGUAGGUCUAUCCGGUUGUACCagauacugaguuggUAACCGGAUACCCCCAUCCCGCUU
(((((..((..((((((((..((((((........))))))))))))))..))...)))))..

Structure

--     -UA  UC        UG      aua 
  GCGGG   GG  UAUCCGGU  UACCag   c
  |||||   ||  ||||||||  ||||||    
  CGCCC   CC  AUAGGCCA  AUgguu   u
UU     UAC  CC        --      gag 

Annotation confidence Low

Genome context

ABKE03000123.1: 893603-893665 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8221

Mature ppc-miR-8221-5p

• Accession: MIMAT0032876
• Description: Pristionchus pacificus ppc-miR-8221-5p mature miRNA
• Sequence: 1 - GCGGGUAGGUCUAUCCGGUUGUACC - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8221-3p

• Accession: MIMAT0032877
• Description: Pristionchus pacificus ppc-miR-8221-3p mature miRNA
• Sequence: 40 - UAACCGGAUACCCCCAUCCCGCUU - 63
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260