Stem-loop ppc-mir-8222

Accession

MI0026866

Description

Pristionchus pacificus ppc-mir-8222 precursor miRNA

Sequence

ACGGCGACAUCCUUAGGAGAAAcagaguguaacucgauagauuUCCCUGAGGUUCUCGCUGCCG
.((((((...(((((((.((((..((((...))))......)))))))))))...))))))...

Structure

--A      CAU       A    ----ca    g 
   CGGCGA   CCUUAGG GAAA      gagu  
   ||||||   ||||||| ||||      |||| u
   GUCGCU   GGAGUCC CUuu      cuca  
GCC      CUU       -    agauag    a 

Annotation confidence Low

Genome context

ABKE03000007.1: 1076539-1076602 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8222

Mature ppc-miR-8222-5p

• Accession: MIMAT0032878
• Description: Pristionchus pacificus ppc-miR-8222-5p mature miRNA
• Sequence: 1 - ACGGCGACAUCCUUAGGAGAAA - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8222-3p

• Accession: MIMAT0032879
• Description: Pristionchus pacificus ppc-miR-8222-3p mature miRNA
• Sequence: 44 - UCCCUGAGGUUCUCGCUGCCG - 64
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260