Stem-loop ppc-mir-8223

Accession

MI0026869

Description

Pristionchus pacificus ppc-mir-8223 precursor miRNA

Sequence

CCGCUGAUUCGCUCAUAUCCUUgcauggaugcgaaUGAUAUGAGCCCACCAGCGAGA
.(((((....(((((((((.(((((....)))))..)))))))))....)))))...

Structure

--C     AUUC         -C     u 
   CGCUG    GCUCAUAUC  UUgca g
   |||||    |||||||||  |||||  
   GCGAC    CGAGUAUAG  agcgu g
AGA     CACC         Ua     a 

Annotation confidence Not enough data

Genome context

ABKE03000073.1: 220630-220686 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8223

Mature ppc-miR-8223-5p

• Accession: MIMAT0032884
• Description: Pristionchus pacificus ppc-miR-8223-5p mature miRNA
• Sequence: 1 - CCGCUGAUUCGCUCAUAUCCUU - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8223-3p

• Accession: MIMAT0032885
• Description: Pristionchus pacificus ppc-miR-8223-3p mature miRNA
• Sequence: 36 - UGAUAUGAGCCCACCAGCGAGA - 57
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260