Stem-loop ppc-mir-8224

Accession

MI0026872

Description

Pristionchus pacificus ppc-mir-8224 precursor miRNA

Sequence

UAUCUGAAUUCAUCACCAGAUCUcugucgauaugucuaucauagAACUGGGCUGAAUUCAGAUGA
((((((((((((.(.((((...(((((.((((....))))))))).))))).)))))))))))).

Structure

-            U A    AUC     c    u 
 UAUCUGAAUUCA C CCAG   Ucugu gaua g
 |||||||||||| | ||||   ||||| ||||  
 GUAGACUUAAGU G GGUC   Agaua cuau u
A            C -    --A     -    c 

Annotation confidence Low

Genome context

ABKE03000003.1: 125624-125688 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8224

Mature ppc-miR-8224-5p

• Accession: MIMAT0032890
• Description: Pristionchus pacificus ppc-miR-8224-5p mature miRNA
• Sequence: 1 - UAUCUGAAUUCAUCACCAGAUCU - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8224-3p

• Accession: MIMAT0032891
• Description: Pristionchus pacificus ppc-miR-8224-3p mature miRNA
• Sequence: 45 - AACUGGGCUGAAUUCAGAUGA - 65
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260