Stem-loop ppc-mir-8225

Accession

MI0026873

Description

Pristionchus pacificus ppc-mir-8225 precursor miRNA

Sequence

AACCCGAUUGGUACCGGUCUCUAUucgcacuugagucgagcAGAGGGGGUCGAUGGGGUCCCG
.((((.((((..(((..(((((.((((.((....)))))).))))).))))))).))))....

Structure

---A    G    GU   GG     A    c  u 
    ACCC AUUG  ACC  UCUCU Uucg ac u
    |||| ||||  |||  ||||| |||| ||  
    UGGG UAGC  UGG  GGAGA gagc ug g
GCCC    G    --   -G     c    -  a 

Annotation confidence Low

Genome context

ABKE03000024.1: 401761-401823 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-8225

Mature ppc-miR-8225-5p

• Accession: MIMAT0032892
• Description: Pristionchus pacificus ppc-miR-8225-5p mature miRNA
• Sequence: 1 - AACCCGAUUGGUACCGGUCUCUAU - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8225-3p

• Accession: MIMAT0032893
• Description: Pristionchus pacificus ppc-miR-8225-3p mature miRNA
• Sequence: 42 - AGAGGGGGUCGAUGGGGUCCCG - 63
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260