Stem-loop ppc-mir-2238g

Accession

MI0026874

Description

Pristionchus pacificus ppc-mir-2238g precursor miRNA

Sequence

CCGUUCACUCUUCUCGUCAGUCgaugauugaauuucgAAUGUCAGAACAGUGCGCGAGA
.(((.((((.((((.(.((.((((..........)))).)).))))).)))).)))...

Structure

--C   U    C    C U  G    ugau 
   CGU CACU UUCU G CA UCga    u
   ||| |||| |||| | || ||||     
   GCG GUGA AAGA C GU Agcu    g
AGA   C    C    - U  A    uuaa 

Annotation confidence Low

Genome context

ABKE03000048.1: 1093688-1093746 [-]

Mature ppc-miR-2238g-5p

• Accession: MIMAT0032894
• Description: Pristionchus pacificus ppc-miR-2238g-5p mature miRNA
• Sequence: 1 - CCGUUCACUCUUCUCGUCAGUC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2238g-3p

• Accession: MIMAT0032895
• Description: Pristionchus pacificus ppc-miR-2238g-3p mature miRNA
• Sequence: 38 - AAUGUCAGAACAGUGCGCGAGA - 59
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260