Stem-loop ppc-mir-8227

Accession

MI0026876

Description

Pristionchus pacificus ppc-mir-8227 precursor miRNA

Sequence

UGGUAACCGCGUGCAAUUUCCaaacuaaugcgaAAUUGCACUCGGGUACCCAGC
.((((.(((.((((((((((((......)).)))))))))).))).))))....

Structure

---U    A   C          -  aa 
    GGUA CCG GUGCAAUUUC Ca  c
    |||| ||| |||||||||| ||   
    CCAU GGC CACGUUAAag gu  u
CGAC    G   U          c  aa 

Annotation confidence Not enough data

Genome context

ABKE03000124.1: 924053-924106 [-]

Mature ppc-miR-8227-5p

• Accession: MIMAT0032898
• Description: Pristionchus pacificus ppc-miR-8227-5p mature miRNA
• Sequence: 1 - UGGUAACCGCGUGCAAUUUCC - 21
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8227-3p

• Accession: MIMAT0032899
• Description: Pristionchus pacificus ppc-miR-8227-3p mature miRNA
• Sequence: 34 - AAUUGCACUCGGGUACCCAGC - 54
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260