Stem-loop ppc-mir-8228

Accession

MI0026877

Description

Pristionchus pacificus ppc-mir-8228 precursor miRNA

Sequence

580 reads, 28.0 reads per million, 11 experiments

AACCGUGUGGCCUACUGGUAGCGUGuuugauucacUACCGGUCGGUCACCGGUUCU
(((((.((((((.((((((((.(.........).)))))))).)))))))))))..

Structure

--     U      U        C UGu 
  AACCG GUGGCC ACUGGUAG G   u
  ||||| |||||| |||||||| |   u
  UUGGC CACUGG UGGCCAUc c   g
UC     -      C        a uua 

Annotation confidence High

Genome context

ABKE03000039.1: 860756-860811 [+]

Mature ppc-miR-8228-5p

• Accession: MIMAT0032900
• Description: Pristionchus pacificus ppc-miR-8228-5p mature miRNA
• Sequence: 1 - AACCGUGUGGCCUACUGGUAGCGUG - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8228-3p

• Accession: MIMAT0032901
• Description: Pristionchus pacificus ppc-miR-8228-3p mature miRNA
• Sequence: 36 - UACCGGUCGGUCACCGGUUCU - 56
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260