Stem-loop ppc-mir-8230

Accession

MI0026880

Description

Pristionchus pacificus ppc-mir-8230 precursor miRNA

Sequence

UAAUCUCACCCGGUGUGUAGUGUggaacacgguugcuguucgagcagaagcacACGCACAACUGGCGAGGGAUUGCC
(((((((.((((((((((.(((((........(((((.....)))))...))))))))).))))).).)))))))..

Structure

--       A -     -    A     gaacacgg     g 
  UAAUCUC C CCGGU GUGU GUGUg        uugcu u
  ||||||| | ||||| |||| |||||        ||||| u
  GUUAGGG G GGUCA CACG CAcac        gacga c
CC       A C     A    -     -----gaa     g 

Annotation confidence Low

Genome context

ABKE03000063.1: 3397734-3397810 [+]

Mature ppc-miR-8230-5p

• Accession: MIMAT0032906
• Description: Pristionchus pacificus ppc-miR-8230-5p mature miRNA
• Sequence: 1 - UAAUCUCACCCGGUGUGUAGUGU - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8230-3p

• Accession: MIMAT0032907
• Description: Pristionchus pacificus ppc-miR-8230-3p mature miRNA
• Sequence: 54 - ACGCACAACUGGCGAGGGAUUGCC - 77
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260