Stem-loop ppc-mir-8231

Accession

MI0026881

Description

Pristionchus pacificus ppc-mir-8231 precursor miRNA

Sequence

UCGUGAACCACCUUUCAAGUACCcuuuugcaucggUAUUGGAAUGCGGUUCAUGGGC
(((((((((.(.((((((.((((..........)))))))))).).)))))))))..

Structure

--         A C      G    cuuu 
  UCGUGAACC C UUUCAA UACC    u
  ||||||||| | |||||| ||||     
  GGUACUUGG G AAGGUU AUgg    g
CG         C U      -    cuac 

Annotation confidence Low

Genome context

ABKE03000076.1: 2723659-2723715 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8231

Mature ppc-miR-8231-5p

• Accession: MIMAT0032908
• Description: Pristionchus pacificus ppc-miR-8231-5p mature miRNA
• Sequence: 1 - UCGUGAACCACCUUUCAAGUACC - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8231-3p

• Accession: MIMAT0032909
• Description: Pristionchus pacificus ppc-miR-8231-3p mature miRNA
• Sequence: 36 - UAUUGGAAUGCGGUUCAUGGGC - 57
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260