Stem-loop ppc-mir-133

Accession

MI0026884

Description

Pristionchus pacificus ppc-mir-133 precursor miRNA

Sequence

GCUGGUUGUUGCGUAGCCAAAUUgucgagucgcucggcuccccugaucaUUUGGUCCCCUCCAACCAGCCA
((((((((..(.(..(((((((.((((((((....)))))....))).)))))))..))..))))))))..

Structure

--        UU C UA       U   ----     g 
  GCUGGUUG  G G  GCCAAAU guc    gaguc c
  ||||||||  | |  ||||||| |||    |||||  
  CGACCAAC  C C  UGGUUUa uag    cucgg u
AC        CU - CC       c   uccc     c 

Annotation confidence Not enough data

Genome context

ABKE03000090.1: 1681432-1681502 [-]

Mature ppc-miR-133-5p

• Accession: MIMAT0032914
• Description: Pristionchus pacificus ppc-miR-133-5p mature miRNA
• Sequence: 1 - GCUGGUUGUUGCGUAGCCAAAUU - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-133-3p

• Accession: MIMAT0032915
• Description: Pristionchus pacificus ppc-miR-133-3p mature miRNA
• Sequence: 50 - UUUGGUCCCCUCCAACCAGCCA - 71
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260