Stem-loop ppc-mir-8235

Accession

MI0026889

Description

Pristionchus pacificus ppc-mir-8235 precursor miRNA

Sequence

UAUCACAGUGCUCCAACGGCGAugaauacgaugcaucGCCGUCUGUUGCUCUGUGAAGCC
..((((((.((..(((((((((((.........))))))))).))..)).))))))....

Structure

--UA      U  UC  -         aau 
    UCACAG GC  CA ACGGCGAug   a
    |||||| ||  || |||||||||   c
    AGUGUC CG  GU UGCCGcuac   g
CCGA      U  UU  C         gua 

Annotation confidence Not enough data

Genome context

ABKE03000131.1: 544810-544869 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8235

Mature ppc-miR-8235-5p

• Accession: MIMAT0032924
• Description: Pristionchus pacificus ppc-miR-8235-5p mature miRNA
• Sequence: 1 - UAUCACAGUGCUCCAACGGCGA - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8235-3p

• Accession: MIMAT0032925
• Description: Pristionchus pacificus ppc-miR-8235-3p mature miRNA
• Sequence: 38 - GCCGUCUGUUGCUCUGUGAAGCC - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260