Stem-loop ppc-mir-8236

Accession

MI0026890

Description

Pristionchus pacificus ppc-mir-8236 precursor miRNA

Sequence

GGGAUCAUUUCACUCGCGGAUCgggcauucccaaUCCCUGAGUGACAUGAACCCGAA
(((.((((.(((((((.((((.(((....))).)))).))))))).)))).)))...

Structure

---   A    U       C    C   c 
   GGG UCAU UCACUCG GGAU ggg a
   ||| |||| ||||||| |||| |||  
   CCC AGUA AGUGAGU CCUa ccc u
AAG   A    C       C    a   u 

Annotation confidence Low

Genome context

ABKE03000076.1: 1092121-1092177 [-]

Mature ppc-miR-8236-5p

• Accession: MIMAT0032926
• Description: Pristionchus pacificus ppc-miR-8236-5p mature miRNA
• Sequence: 1 - GGGAUCAUUUCACUCGCGGAUC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8236-3p

• Accession: MIMAT0032927
• Description: Pristionchus pacificus ppc-miR-8236-3p mature miRNA
• Sequence: 35 - UCCCUGAGUGACAUGAACCCGAA - 57
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260