Stem-loop ppc-mir-8237

Accession

MI0026891

Description

Pristionchus pacificus ppc-mir-8237 precursor miRNA

Sequence

ACCUCGAGUUCUGGCGCUUUCGACCuacaugguggUUAAAGCUCGGUACUGGAGGUUC
(((((.(((.((((.(((((.((((........))))))))))))).))).)))))..

Structure

--     G   U    C     C    uac 
  ACCUC AGU CUGG GCUUU GACC   a
  ||||| ||| |||| ||||| ||||    
  UGGAG UCA GGCU CGAAA UUgg   u
CU     G   U    -     -    ugg 

Annotation confidence Low

Genome context

ABKE03000123.1: 3623630-3623687 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8237

Mature ppc-miR-8237-5p

• Accession: MIMAT0032928
• Description: Pristionchus pacificus ppc-miR-8237-5p mature miRNA
• Sequence: 1 - ACCUCGAGUUCUGGCGCUUUCGACC - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8237-3p

• Accession: MIMAT0032929
• Description: Pristionchus pacificus ppc-miR-8237-3p mature miRNA
• Sequence: 36 - UUAAAGCUCGGUACUGGAGGUUC - 58
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260