Stem-loop ppc-mir-2238h

Accession

MI0026892

Description

Pristionchus pacificus ppc-mir-2238h precursor miRNA

Sequence

CCGUUCACUCAACUCGUCAGUCgauuauugaauuucgAAUGACAGUUCAGUGCGCGAGA
.(((.((((.((((.((((.((((..........)))).)))))))).)))).)))...

Structure

--C   U    C    C    G    uuau 
   CGU CACU AACU GUCA UCga    u
   ||| |||| |||| |||| ||||     
   GCG GUGA UUGA CAGU Agcu    g
AGA   C    C    -    A    uuaa 

Annotation confidence Low

Genome context

ABKE03000093.1: 9109494-9109552 [-]

Mature ppc-miR-2238h-5p

• Accession: MIMAT0032930
• Description: Pristionchus pacificus ppc-miR-2238h-5p mature miRNA
• Sequence: 1 - CCGUUCACUCAACUCGUCAGUC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2238h-3p

• Accession: MIMAT0032931
• Description: Pristionchus pacificus ppc-miR-2238h-3p mature miRNA
• Sequence: 38 - AAUGACAGUUCAGUGCGCGAGA - 59
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260