Stem-loop ppc-mir-8239

Accession

MI0026894

Description

Pristionchus pacificus ppc-mir-8239 precursor miRNA

Sequence

CACCUGAUUUCGAUUACUCACUgaccauuuguugccucgUGAGCAUAUCCAAAUCGGGAGCC
..((((((((.(((..(((((.((.((.....))..)))))))...))).))))))))....

Structure

--CA        C   -UA     U  -c  u 
    CCUGAUUU GAU   CUCAC ga  ca u
    |||||||| |||   ||||| ||  || u
    GGGCUAAA CUA   GAGUg cu  gu g
CCGA        C   UAC     -  cc  u 

Annotation confidence Low

Genome context

ABKE03000015.1: 218778-218839 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8239

Mature ppc-miR-8239-5p

• Accession: MIMAT0032934
• Description: Pristionchus pacificus ppc-miR-8239-5p mature miRNA
• Sequence: 1 - CACCUGAUUUCGAUUACUCACU - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8239-3p

• Accession: MIMAT0032935
• Description: Pristionchus pacificus ppc-miR-8239-3p mature miRNA
• Sequence: 40 - UGAGCAUAUCCAAAUCGGGAGCC - 62
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260