miRBase entry: ppc-mir-8242

Stem-loop ppc-mir-8242

Accession

MI0026898

Description

Pristionchus pacificus ppc-mir-8242 precursor miRNA

Sequence

ACUCCGUCCACUGCAUAUCAUUccugcagaaagggcaaUGAUAUUUAGUGGCACGGAGUGA
(((((((((((((.(((((((((((.......))).)))))))).)))))).)))))))..

Structure

--       -      C        -   gc 
  ACUCCGU CCACUG AUAUCAUU ccu  a
  ||||||| |||||| |||||||| |||  g
  UGAGGCA GGUGAU UAUAGUaa ggg  a
AG       C      U        c   aa

Annotation confidence Not enough data

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Genome context

ABKE03000028.1: 1910714-1910774 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8242

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8242-5p

Accession	MIMAT0032942
Description	Pristionchus pacificus ppc-miR-8242-5p mature miRNA
Sequence	1 - ACUCCGUCCACUGCAUAUCAUU - 22
Evidence	experimental Illumina [1], SOLiD [1]

Mature ppc-miR-8242-3p

Accession	MIMAT0032943
Description	Pristionchus pacificus ppc-miR-8242-3p mature miRNA
Sequence	39 - UGAUAUUUAGUGGCACGGAGUGA - 61
Evidence	experimental Illumina [1], SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260