Stem-loop ppc-mir-8244

Accession

MI0026901

Description

Pristionchus pacificus ppc-mir-8244 precursor miRNA

Sequence

UGGUAUUUUCCCGGCGCAUUUUACAgucuucgaaucugUAAUGCCCUAGGAAAUGCCUAG
.(((((((((..((.((((..(((((.........)))))))))))..)))))))))...

Structure

--U         CC  C    UU     ucu 
   GGUAUUUUC  GG GCAU  UACAg   u
   |||||||||  || ||||  |||||   c
   CCGUAAAGG  CC CGUA  AUguc   g
GAU         AU  -    --     uaa 

Annotation confidence Low

Genome context

ABKE03000096.1: 196567-196626 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8244

Mature ppc-miR-8244-5p

• Accession: MIMAT0032948
• Description: Pristionchus pacificus ppc-miR-8244-5p mature miRNA
• Sequence: 1 - UGGUAUUUUCCCGGCGCAUUUUACA - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8244-3p

• Accession: MIMAT0032949
• Description: Pristionchus pacificus ppc-miR-8244-3p mature miRNA
• Sequence: 39 - UAAUGCCCUAGGAAAUGCCUAG - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260