Stem-loop ppc-mir-2235c

Accession

MI0026902

Description

Pristionchus pacificus ppc-mir-2235c precursor miRNA

Sequence

CCACCCAGUCCGCUCGGUCUGAACcauucccgaaaguguguUCACCGGGAGUAUUGCGUGAUC
.(((.((((.(.((((((..((((((((......)))).)))))))))).).)))).)))...

Structure

--C   C    C G      CU    -    cc 
   CAC CAGU C CUCGGU  GAAC cauu  c
   ||| |||| | ||||||  |||| ||||   
   GUG GUUA G GGGCCA  CUug guga  g
CUA   C    U A      --    u    aa 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 3623214-3623276 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-2235c

Mature ppc-miR-2235c-5p

• Accession: MIMAT0032950
• Description: Pristionchus pacificus ppc-miR-2235c-5p mature miRNA
• Sequence: 1 - CCACCCAGUCCGCUCGGUCUGAAC - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2235c-3p

• Accession: MIMAT0032951
• Description: Pristionchus pacificus ppc-miR-2235c-3p mature miRNA
• Sequence: 42 - UCACCGGGAGUAUUGCGUGAUC - 63
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260