Stem-loop ppc-mir-8247

Accession

MI0026906

Description

Pristionchus pacificus ppc-mir-8247 precursor miRNA

Sequence

212 reads, 16.0 reads per million, 11 experiments

UGAGUGCCUCGUUACAUUGUGCGUUugagaggaagaaucgUAAUGUAAGGGUGGCACUCACA
((((((((((.((((((((((.((((........)))))))))))))).)).))))))))..

Structure

--        -  G          C    gag 
  UGAGUGCC UC UUACAUUGUG GUUu   a
  |||||||| || |||||||||| ||||    
  ACUCACGG GG AAUGUAAUgc uaag   g
AC        U  G          -    aag 

Annotation confidence High

Genome context

ABKE03000031.1: 569077-569138 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8247

Mature ppc-miR-8247-5p

• Accession: MIMAT0032958
• Description: Pristionchus pacificus ppc-miR-8247-5p mature miRNA
• Sequence: 1 - UGAGUGCCUCGUUACAUUGUGCGUU - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8247-3p

• Accession: MIMAT0032959
• Description: Pristionchus pacificus ppc-miR-8247-3p mature miRNA
• Sequence: 41 - UAAUGUAAGGGUGGCACUCACA - 62
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260