miRBase entry: ppc-mir-8247

Stem-loop ppc-mir-8247

Accession

MI0026906

Description

Pristionchus pacificus ppc-mir-8247 precursor miRNA

Sequence

UGAGUGCCUCGUUACAUUGUGCGuuugagaggaagaaucGUAAUGUAAGGGUGGCACUCACA
((((((((((.((((((((((.((((........)))))))))))))).)).))))))))..

Structure

--        -  G          C    gag 
  UGAGUGCC UC UUACAUUGUG Guuu   a
  |||||||| || |||||||||| ||||    
  ACUCACGG GG AAUGUAAUGc uaag   g
AC        U  G          -    aag

Annotation confidence Not enough data

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Genome context

ABKE03000031.1: 569077-569138 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8247

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8247-5p

Accession	MIMAT0032958
Description	Pristionchus pacificus ppc-miR-8247-5p mature miRNA
Sequence	1 - UGAGUGCCUCGUUACAUUGUGCG - 23
Evidence	experimental Illumina [1], SOLiD [1]

Mature ppc-miR-8247-3p

Accession	MIMAT0032959
Description	Pristionchus pacificus ppc-miR-8247-3p mature miRNA
Sequence	40 - GUAAUGUAAGGGUGGCACUCACA - 62
Evidence	experimental Illumina [1], SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260