Stem-loop ppc-mir-8248

Accession

MI0026907

Description

Pristionchus pacificus ppc-mir-8248 precursor miRNA

Sequence

CGCGGUCUUUGCUUCGCUAUUUGCuauauugaaugcaAAUAGCAUGCAUAGGCUGAGG
(.((((((.(((...(((((((((..........)))))))))..))).)))))).).

Structure

- G      U   UUC         uaua 
 C CGGUCU UGC   GCUAUUUGC    u
 | |||||| |||   |||||||||     
 G GUCGGA ACG   CGAUAAacg    u
G A      U   -UA         uaag 

Annotation confidence Low

Genome context

ABKE03000039.1: 666392-666449 [+]

Mature ppc-miR-8248-5p

• Accession: MIMAT0032960
• Description: Pristionchus pacificus ppc-miR-8248-5p mature miRNA
• Sequence: 1 - CGCGGUCUUUGCUUCGCUAUUUGC - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8248-3p

• Accession: MIMAT0032961
• Description: Pristionchus pacificus ppc-miR-8248-3p mature miRNA
• Sequence: 38 - AAUAGCAUGCAUAGGCUGAGG - 58
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260