Stem-loop ppc-mir-8249

Accession

MI0026908

Description

Pristionchus pacificus ppc-mir-8249 precursor miRNA

Sequence

ACCGGCUCCUCGUUGCCUUAUUcgccggucgugaaUAAGGCACCCAGGACUUGGCGA
.((((.((((.(.((((((((((((.....)))))))))))).).)))).))))...

Structure

--A    C    C U            c 
   CCGG UCCU G UGCCUUAUUcgc g
   |||| |||| | |||||||||||| g
   GGUU AGGA C ACGGAAUaagug u
AGC    C    C C            c 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1907126-1907182 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8249

Mature ppc-miR-8249-5p

• Accession: MIMAT0032962
• Description: Pristionchus pacificus ppc-miR-8249-5p mature miRNA
• Sequence: 1 - ACCGGCUCCUCGUUGCCUUAUU - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8249-3p

• Accession: MIMAT0032963
• Description: Pristionchus pacificus ppc-miR-8249-3p mature miRNA
• Sequence: 36 - UAAGGCACCCAGGACUUGGCGA - 57
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260