Stem-loop ppc-mir-84c

Accession

MI0026912

Description

Pristionchus pacificus ppc-mir-84c precursor miRNA

Literature search

1 open access papers mention ppc-mir-84c
(1 sentences)

Sequence

UGAGGUAGUUAAGAAAGACCGAuggcauggaauuacucGCUCUUUCGCUUCUACCUCGGC
((((((((....((((((.(((.(...........)))).))))))....))))))))..

Structure

--        UUAA      C   u gcau 
  UGAGGUAG    GAAAGA CGA g    g
  ||||||||    |||||| ||| |    g
  GCUCCAUC    CUUUCU Gcu c    a
CG        UUCG      C   - auua 

Annotation confidence Low

Genome context

ABKE03000008.1: 1931408-1931467 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-84c

Mature ppc-miR-84c-5p

• Accession: MIMAT0032970
• Description: Pristionchus pacificus ppc-miR-84c-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUAAGAAAGACCGA - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-84c-3p

• Accession: MIMAT0032971
• Description: Pristionchus pacificus ppc-miR-84c-3p mature miRNA
• Sequence: 39 - GCUCUUUCGCUUCUACCUCGGC - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260