Stem-loop ppc-mir-8254

Accession

MI0026915

Description

Pristionchus pacificus ppc-mir-8254 precursor miRNA

Sequence

UCACGUGUUGCACCUUCCCAUCcggcauacgguaucggcgaUGGCAGUUGUACCACGUGGGA
(((((((.((((((.(((((((((.....))).)).)).)).))....)))).)))))))..

Structure

--       U    ----  U  -  -  -   g 
  UCACGUG UGCA    CC UC CC AU Ccg c
  ||||||| ||||    || || || || ||| a
  GGUGCAC AUGU    GG ag gg ua ggc u
AG       C    UGAC  U  c  c  u   a 

Annotation confidence Not enough data

Genome context

ABKE03000076.1: 2723250-2723311 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8254

Mature ppc-miR-8254-5p

• Accession: MIMAT0032976
• Description: Pristionchus pacificus ppc-miR-8254-5p mature miRNA
• Sequence: 1 - UCACGUGUUGCACCUUCCCAUC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8254-3p

• Accession: MIMAT0032977
• Description: Pristionchus pacificus ppc-miR-8254-3p mature miRNA
• Sequence: 42 - UGGCAGUUGUACCACGUGGGA - 62
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260