miRBase entry: ppc-mir-8255

Stem-loop ppc-mir-8255

Accession

MI0026916

Description

Pristionchus pacificus ppc-mir-8255 precursor miRNA

Sequence

UAUGCCCCGCGUCAAGGAUCAACUucgaugaugauaagUUGGCCCAUGACUGGAGGUAUAGC
(((((((((.((((.((.((((((((......))..)))))).)).))))))).))))))..

Structure

--      -   C    A  A      --  ga 
  UAUGCC CCG GUCA GG UCAACU  uc  u
  |||||| ||| |||| || ||||||  ||   
  AUAUGG GGU CAGU CC GGUUga  ag  g
CG      A   -    A  C      au  ua

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 237101-237162 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from ppc-mir-8255

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8255-5p

Accession	MIMAT0032978
Description	Pristionchus pacificus ppc-miR-8255-5p mature miRNA
Sequence	1 - UAUGCCCCGCGUCAAGGAUCAACU - 24
Evidence	experimental Illumina [1], SOLiD [1]

Mature ppc-miR-8255-3p

Accession	MIMAT0032979
Description	Pristionchus pacificus ppc-miR-8255-3p mature miRNA
Sequence	39 - UUGGCCCAUGACUGGAGGUAUAGC - 62
Evidence	experimental Illumina [1], SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260