Stem-loop ppc-mir-8257

Accession

MI0026918

Description

Pristionchus pacificus ppc-mir-8257 precursor miRNA

Sequence

AUCGCGUAUCGCCCGUGUGUGCucgcauaagaaguACUCACCGGGAGAAAUGCGAUGU
(((((((.((.((((((.((((((......).))))).)).)))).)).)))))))..

Structure

--       A  G    -  U     - gc 
  AUCGCGU UC CCCG UG GUGCu c  a
  ||||||| || |||| || ||||| |   
  UAGCGUA AG GGGC AC CAuga g  u
UG       A  A    C  U     a aa 

Annotation confidence Not enough data

Genome context

ABKE03000031.1: 559971-560028 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8257

Mature ppc-miR-8257-5p

• Accession: MIMAT0032982
• Description: Pristionchus pacificus ppc-miR-8257-5p mature miRNA
• Sequence: 1 - AUCGCGUAUCGCCCGUGUGUGC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8257-3p

• Accession: MIMAT0032983
• Description: Pristionchus pacificus ppc-miR-8257-3p mature miRNA
• Sequence: 36 - ACUCACCGGGAGAAAUGCGAUGU - 58
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260