Stem-loop ppc-mir-8258

Accession

MI0026919

Description

Pristionchus pacificus ppc-mir-8258 precursor miRNA

Sequence

ACGCUCAUUCAAGACCAUGACAcggcaauaaacgaugUCAUGAUCUUGAUCGGGUGCCA
.(((((..((((((.(((((((((........)).))))))).))))))..)))))...

Structure

--A     AU      C       -  gca 
   CGCUC  UCAAGA CAUGACA cg   a
   |||||  |||||| ||||||| ||    
   GUGGG  AGUUCU GUACUgu gc   u
ACC     CU      A       a  aaa 

Annotation confidence Not enough data

Genome context

ABKE03000094.1: 924361-924419 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8258

Mature ppc-miR-8258-5p

• Accession: MIMAT0032984
• Description: Pristionchus pacificus ppc-miR-8258-5p mature miRNA
• Sequence: 1 - ACGCUCAUUCAAGACCAUGACA - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8258-3p

• Accession: MIMAT0032985
• Description: Pristionchus pacificus ppc-miR-8258-3p mature miRNA
• Sequence: 38 - UCAUGAUCUUGAUCGGGUGCCA - 59
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260