Stem-loop ppc-mir-8259

Accession

MI0026920

Description

Pristionchus pacificus ppc-mir-8259 precursor miRNA

Sequence

UGCGAUGACUGCCUGUUACAGUAauguaaugaauauuaUUGAGCAAGCUCUCGUCGCAUC
((((((((..((.((((.(((((((((.....))))))))))))).))..))))))))..

Structure

--        CU  C    A         a 
  UGCGAUGA  GC UGUU CAGUAaugu a
  ||||||||  || |||| ||||||||| u
  ACGCUGCU  CG ACGA GUUauuaua g
CU        CU  A    -         a 

Annotation confidence Low

Genome context

ABKE03000131.1: 499907-499966 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8259

Mature ppc-miR-8259-5p

• Accession: MIMAT0032986
• Description: Pristionchus pacificus ppc-miR-8259-5p mature miRNA
• Sequence: 1 - UGCGAUGACUGCCUGUUACAGUA - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8259-3p

• Accession: MIMAT0032987
• Description: Pristionchus pacificus ppc-miR-8259-3p mature miRNA
• Sequence: 39 - UUGAGCAAGCUCUCGUCGCAUC - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260