Stem-loop ppc-mir-8250c

Accession

MI0026923

Description

Pristionchus pacificus ppc-mir-8250c precursor miRNA

Sequence

UCCUUUAUUUAUCUGAUUUGGAUUGucauuugaaucaAUCGUCAGGUAUAAUGAGGGAUA
(((((((((((((((((...(((((..........))))))))))))).)))))))))..

Structure

--         -        UUG     ucau 
  UCCUUUAUU UAUCUGAU   GAUUG    u
  ||||||||| ||||||||   |||||     
  AGGGAGUAA AUGGACUG   CUAac    u
AU         U        ---     uaag 

Annotation confidence Low

Genome context

ABKE03000008.1: 1298137-1298196 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8250c

Mature ppc-miR-8250c-5p

• Accession: MIMAT0032991
• Description: Pristionchus pacificus ppc-miR-8250c-5p mature miRNA
• Sequence: 1 - UCCUUUAUUUAUCUGAUUUGGAUUG - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8250c-3p

• Accession: MIMAT0032992
• Description: Pristionchus pacificus ppc-miR-8250c-3p mature miRNA
• Sequence: 38 - AUCGUCAGGUAUAAUGAGGGAUA - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260