Stem-loop ppc-mir-57

Accession

MI0026927

Description

Pristionchus pacificus ppc-mir-57 precursor miRNA

Sequence

UACCCUGUAGUUCCGAGCCGUGUAucgcgcaaaugauggcucauaCACACUCGGUUACCGGGUGCU
(((((.((((..(((((..((((((.(.((........)).))))))).))))))))).)))))..

Structure

--     U    UU     CC      c c  aaa 
  UACCC GUAG  CCGAG  GUGUAu g gc   u
  ||||| ||||  |||||  |||||| | ||    
  GUGGG CAUU  GGCUC  CACaua c cg   g
UC     C    --     -A      - u  gua 

Annotation confidence Low

Genome context

ABKE03000123.1: 4892676-4892741 [-]

Mature ppc-miR-57-5p

• Accession: MIMAT0032999
• Description: Pristionchus pacificus ppc-miR-57-5p mature miRNA
• Sequence: 1 - UACCCUGUAGUUCCGAGCCGUGUA - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-57-3p

• Accession: MIMAT0033000
• Description: Pristionchus pacificus ppc-miR-57-3p mature miRNA
• Sequence: 46 - CACACUCGGUUACCGGGUGCU - 66
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260