miRBase entry: ppc-mir-71b

Stem-loop ppc-mir-71b


Accession
MI0026931
Description
Pristionchus pacificus ppc-mir-71b precursor miRNA

Literature search
2 open access papers mention ppc-mir-71b
(18 sentences)

Sequence

UGAAAAACUUGGGUAGUGAGACGaugugaauugaaugcuuucgUAUCACUAUUCAGUCUUUCGCC
.((((.(((.(((((((((.((((................)))).)))))))))))).))))...

Structure
--U    A   U         G    ugugaau 
   GAAA ACU GGGUAGUGA ACGa       u
   |||| ||| ||||||||| ||||        
   CUUU UGA CUUAUCACU Ugcu       g
CCG    C   -         A    uucguaa 


Annotation confidence Not enough data
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Genome context
ABKE03000107.1: 286726-286790 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-71b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-71b-5p

Accession MIMAT0033006
Description Pristionchus pacificus ppc-miR-71b-5p mature miRNA
Sequence 1 - UGAAAAACUUGGGUAGUGAGACG - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-71b-3p

Accession MIMAT0033007
Description Pristionchus pacificus ppc-miR-71b-3p mature miRNA
Sequence 44 - UAUCACUAUUCAGUCUUUCGCC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260