Stem-loop ppc-mir-71b

Accession

MI0026931

Description

Pristionchus pacificus ppc-mir-71b precursor miRNA

Literature search

2 open access papers mention ppc-mir-71b
(18 sentences)

Sequence

UGAAAAACUUGGGUAGUGAGACGaugugaauugaaugcuuucgUAUCACUAUUCAGUCUUUCGCC
.((((.(((.(((((((((.((((................)))).)))))))))))).))))...

Structure

--U    A   U         G    ugugaau 
   GAAA ACU GGGUAGUGA ACGa       u
   |||| ||| ||||||||| ||||        
   CUUU UGA CUUAUCACU Ugcu       g
CCG    C   -         A    uucguaa 

Annotation confidence Low

Genome context

ABKE03000107.1: 286726-286790 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-71b

Mature ppc-miR-71b-5p

• Accession: MIMAT0033006
• Description: Pristionchus pacificus ppc-miR-71b-5p mature miRNA
• Sequence: 1 - UGAAAAACUUGGGUAGUGAGACG - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-71b-3p

• Accession: MIMAT0033007
• Description: Pristionchus pacificus ppc-miR-71b-3p mature miRNA
• Sequence: 44 - UAUCACUAUUCAGUCUUUCGCC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260