Stem-loop ppc-mir-8262

Accession

MI0026932

Description

Pristionchus pacificus ppc-mir-8262 precursor miRNA

Sequence

2154 reads, 101.0 reads per million, 12 experiments

GUGAGUUGCAUACAUGUCGACauuucuaagugauaaccccugaaaUAUCGACACAUAUGGACUCCCAG
(.(((((.((((..((((((.(((((...((....))....))))).))))))..))))))))).)..

Structure

-- U     G    CA      C     -uaa  g 
  G GAGUU CAUA  UGUCGA auuuc    gu a
  | ||||| ||||  |||||| |||||    ||  
  C CUCAG GUAU  ACAGCU Uaaag    ca u
GA C     -    AC      A     uccc  a 

Annotation confidence High

Genome context

ABKE03000129.1: 1443624-1443691 [+]

Mature ppc-miR-8262-5p

• Accession: MIMAT0033008
• Description: Pristionchus pacificus ppc-miR-8262-5p mature miRNA
• Sequence: 1 - GUGAGUUGCAUACAUGUCGAC - 21
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8262-3p

• Accession: MIMAT0033009
• Description: Pristionchus pacificus ppc-miR-8262-3p mature miRNA
• Sequence: 46 - UAUCGACACAUAUGGACUCCCAG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260