Stem-loop ppc-mir-8263

Accession

MI0026933

Description

Pristionchus pacificus ppc-mir-8263 precursor miRNA

Sequence

CGGUCGAAUCGGAUCUCACAGAgcgcgugcacucgauugucUCUGGGAAACGCUUCGACUGGA
((((((((.((..(((((.(((...((......))....))).)))))..)).))))))))..

Structure

--        U  GA     C   -gcg  ug 
  CGGUCGAA CG  UCUCA AGA    cg  c
  |||||||| ||  ||||| |||    ||   
  GUCAGCUU GC  AGGGU Ucu    gc  a
AG        C  AA     C   guua  uc 

Annotation confidence Low

Genome context

ABKE03000073.1: 220213-220275 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8263

Mature ppc-miR-8263-5p

• Accession: MIMAT0033010
• Description: Pristionchus pacificus ppc-miR-8263-5p mature miRNA
• Sequence: 1 - CGGUCGAAUCGGAUCUCACAGA - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8263-3p

• Accession: MIMAT0033011
• Description: Pristionchus pacificus ppc-miR-8263-3p mature miRNA
• Sequence: 42 - UCUGGGAAACGCUUCGACUGGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260