miRBase entry: ppc-mir-8263

Stem-loop ppc-mir-8263

Accession

MI0026933

Description

Pristionchus pacificus ppc-mir-8263 precursor miRNA

Sequence

CGGUCGAAUCGGAUCUCACAGAgcgcgugcacucgauugucUCUGGGAAACGCUUCGACUGGA
((((((((.((..(((((.(((...((......))....))).)))))..)).))))))))..

Structure

--        U  GA     C   -gcg  ug 
  CGGUCGAA CG  UCUCA AGA    cg  c
  |||||||| ||  ||||| |||    ||   
  GUCAGCUU GC  AGGGU Ucu    gc  a
AG        C  AA     C   guua  uc

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 220213-220275 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8263

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8263-5p

Accession	MIMAT0033010
Description	Pristionchus pacificus ppc-miR-8263-5p mature miRNA
Sequence	1 - CGGUCGAAUCGGAUCUCACAGA - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8263-3p

Accession	MIMAT0033011
Description	Pristionchus pacificus ppc-miR-8263-3p mature miRNA
Sequence	42 - UCUGGGAAACGCUUCGACUGGA - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260