miRBase entry: ppc-mir-8265

Stem-loop ppc-mir-8265

Accession

MI0026935

Description

Pristionchus pacificus ppc-mir-8265 precursor miRNA

Sequence

UGCGUAGCCAGAGCAUCAGUCCaagucgcuggauacggUCUGAUACUCUUCGCUGCGCGGGA
((((((((.((((.(((((.((..(((....)))..)).))))).))))..))))))))...

Structure

---        -C    C     U  aa   g 
   UGCGUAGC  AGAG AUCAG CC  guc c
   ||||||||  |||| ||||| ||  |||  
   GCGCGUCG  UCUC UAGUC gg  uag u
AGG        CU    A     U  ca   g

Annotation confidence Not enough data

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Genome context

ABKE03000076.1: 2723937-2723998 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8265

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8265-5p

Accession	MIMAT0033014
Description	Pristionchus pacificus ppc-miR-8265-5p mature miRNA
Sequence	1 - UGCGUAGCCAGAGCAUCAGUCC - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8265-3p

Accession	MIMAT0033015
Description	Pristionchus pacificus ppc-miR-8265-3p mature miRNA
Sequence	39 - UCUGAUACUCUUCGCUGCGCGGGA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260