Stem-loop ppc-mir-8271

Accession

MI0026946

Description

Pristionchus pacificus ppc-mir-8271 precursor miRNA

Sequence

UAUCAGUCAUCUUCCCAGUAUAucgaaauagauggauaUACUGGAUAGAUAAGUGAUAGA
(((((.(.((((..((((((((((.(......).))))))))))..)))).).)))))..

Structure

--     G C    UC          g aa 
  UAUCA U AUCU  CCAGUAUAuc a  u
  ||||| | ||||  |||||||||| |   
  AUAGU A UAGA  GGUCAUauag u  a
AG     G A    UA          g ag 

Annotation confidence Not enough data

Genome context

ABKE03000003.1: 124956-125015 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8271

Mature ppc-miR-8271-5p

• Accession: MIMAT0033035
• Description: Pristionchus pacificus ppc-miR-8271-5p mature miRNA
• Sequence: 1 - UAUCAGUCAUCUUCCCAGUAUA - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8271-3p

• Accession: MIMAT0033036
• Description: Pristionchus pacificus ppc-miR-8271-3p mature miRNA
• Sequence: 39 - UACUGGAUAGAUAAGUGAUAGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260